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Steinberg, J. Southam, L. Roumeliotis, T.I. Clark, M.J. Jayasuriya, R.L. Swift, D. Shah, K.M. Butterfield, N.C. Brooks, R.A. McCaskie, A.W. Bassett, J.H. Williams, G.R. Choudhary, J.S. Wilkinson, J.M. Zeggini, E. (2021). A molecular quantitative trait locus map for osteoarthritis. Nature communications, Vol.12 (1).  show abstract

van der Weyden, L. Harle, V. Turner, G. Offord, V. Iyer, V. Droop, A. Swiatkowska, A. Rabbie, R. Campbell, A.D. Sansom, O.J. Pardo, M. Choudhary, J.S. Ferreira, I. Tullett, M. Arends, M.J. Speak, A.O. Adams, D.J. (2021). CRISPR activation screen in mice identifies novel membrane proteins enhancing pulmonary metastatic colonisation. Communications biology, Vol.4 (1).  show abstract

Carson, D. Barry, R. Hopkins, E.G. Roumeliotis, T.I. García‐Weber, D. Mullineaux‐Sanders, C. Elinav, E. Arrieumerlou, C. Choudhary, J.S. Frankel, G. (2020). Citrobacter rodentium induces rapid and unique metabolic and inflammatory responses in mice suffering from severe disease. Cellular microbiology, Vol.22 (1).

Jackman, M. Marcozzi, C. Barbiero, M. Pardo, M. Yu, L. Tyson, A.L. Choudhary, J.S. Pines, J. (2020). Cyclin B1-Cdk1 facilitates MAD1 release from the nuclear pore to ensure a robust spindle checkpoint. Journal of cell biology, Vol.219 (6).  show abstract

Zhu, F. Collins, M.O. Harmse, J. Choudhary, J.S. Grant, S.G. Komiyama, N.H. (2020). Cell‐type‐specific visualisation and biochemical isolation of endogenous synaptic proteins in mice. European journal of neuroscience, Vol.51 (3), pp. 793-805.

Barry, R. Ruano-Gallego, D. Radhakrishnan, S.T. Lovell, S. Yu, L. Kotik, O. Glegola-Madejska, I. Tate, E.W. Choudhary, J.S. Williams, H.R. Frankel, G. (2020). Faecal neutrophil elastase-antiprotease balance reflects colitis severity. Mucosal immunology, Vol.13 (2), pp. 322-333.  show abstract

Chen, Y.-. Roumeliotis, T.I. Chang, Y.-. Chen, C.-. Han, C.-. Lin, M.-. Chen, H.-. Chang, G.-. Chang, Y.-. Wu, C.-. Lin, M.-. Hsieh, M.-. Wang, Y.-. Chen, Y.-. Jonassen, I. Ghavidel, F.Z. Lin, Z.-. Lin, K.-. Chen, C.-. Sheu, P.-. Hung, C.-. Huang, K.-. Yang, H.-. Lin, P.-. Yen, T.-. Lin, Y.-. Wang, J.-. Raghav, L. Lin, C.-. Chen, Y.-. Wu, P.-. Lai, C.-. Weng, S.-. Su, K.-. Chang, W.-. Tsai, P.-. Robles, A.I. Rodriguez, H. Hsiao, Y.-. Chang, W.-. Sung, T.-. Chen, J.-. Yu, S.-. Choudhary, J.S. Chen, H.-. Yang, P.-. Chen, Y.-. (2020). Proteogenomics of Non-smoking Lung Cancer in East Asia Delineates Molecular Signatures of Pathogenesis and Progression. Cell, Vol.182 (1), pp. 226-244.e17.

Cano-Gamez, E. Soskic, B. Roumeliotis, T.I. So, E. Smyth, D.J. Baldrighi, M. Willé, D. Nakic, N. Esparza-Gordillo, J. Larminie, C.G. Bronson, P.G. Tough, D.F. Rowan, W.C. Choudhary, J.S. Trynka, G. (2020). Single-cell transcriptomics identifies an effectorness gradient shaping the response of CD4+ T cells to cytokines. Nature communications, Vol.11 (1).

Khan, Y.A. Jungreis, I. Wright, J.C. Mudge, J.M. Choudhary, J.S. Firth, A.E. Kellis, M. (2020). Evidence for a novel overlapping coding sequence in POLG initiated at a CUG start codon. Bmc genetics, Vol.21 (1).  show abstract

Lee, Y.-. Khan, K. Armfield-Uhas, K. Srikanth, S. Thompson, N.A. Pardo, M. Yu, L. Norris, J.W. Peng, Y. Gripp, K.W. Aleck, K.A. Li, C. Spence, E. Choi, T.-. Kwon, S.J. Park, H.-. Yu, D. Do Heo, W. Mooney, M.R. Baig, S.M. Wentzensen, I.M. Telegrafi, A. McWalter, K. Moreland, T. Roadhouse, C. Ramsey, K. Lyons, M.J. Skinner, C. Alexov, E. Katsanis, N. Stevenson, R.E. Choudhary, J.S. Adams, D.J. Kim, C.-. Davis, E.E. Schwartz, C.E. (2020). Mutations in FAM50A suggest that Armfield XLID syndrome is a spliceosomopathy. Nature communications, Vol.11 (1).

Snyder, M.P. Gingeras, T.R. Moore, J.E. Weng, Z. Gerstein, M.B. Ren, B. Hardison, R.C. Stamatoyannopoulos, J.A. Graveley, B.R. Feingold, E.A. Pazin, M.J. Pagan, M. Gilchrist, D.A. Hitz, B.C. Cherry, J.M. Bernstein, B.E. Mendenhall, E.M. Zerbino, D.R. Frankish, A. Flicek, P. Myers, R.M. (2020). Perspectives on ENCODE. Nature, Vol.583 (7818), pp. 693-698.

Zhang, W. Chronis, C. Chen, X. Zhang, H. Spalinskas, R. Pardo, M. Chen, L. Wu, G. Zhu, Z. Yu, Y. Yu, L. Choudhary, J. Nichols, J. Parast, M.M. Greber, B. Sahlén, P. Plath, K. (2019). The BAF and PRC2 Complex Subunits Dpf2 and Eed Antagonistically Converge on Tbx3 to Control ESC Differentiation. Cell stem cell, Vol.24 (1), pp. 138-152.e8.

Roumeliotis, T.I. Weisser, H. Choudhary, J.S. (2019). Evaluation of a Dual Isolation Width Acquisition Method for Isobaric Labeling Ratio Decompression. J proteome res, Vol.18 (3), pp. 1433-1440.  show abstract

Hopkins, E.G. Roumeliotis, T.I. Mullineaux-Sanders, C. Choudhary, J.S. Frankel, G. (2019). Intestinal Epithelial Cells and the Microbiome Undergo Swift Reprogramming at the Inception of Colonic Citrobacter rodentium Infection. Mbio, Vol.10 (2).  show abstract

Moens, T.G. Niccoli, T. Wilson, K.M. Atilano, M.L. Birsa, N. Gittings, L.M. Holbling, B.V. Dyson, M.C. Thoeng, A. Neeves, J. Glaria, I. Yu, L. Bussmann, J. Storkebaum, E. Pardo, M. Choudhary, J.S. Fratta, P. Partridge, L. Isaacs, A.M. (2019). C9orf72 arginine-rich dipeptide proteins interact with ribosomal proteins in vivo to induce a toxic translational arrest that is rescued by eIF1A. Acta neuropathologica, Vol.137 (3), pp. 487-500.

Gentzel, M. Pardo, M. Subramaniam, S. Stewart, A.F. Choudhary, J.S. (2019). Proteomic navigation using proximity-labeling. Methods, Vol.164-165, pp. 67-72.

Hillier, C. Pardo, M. Yu, L. Bushell, E. Sanderson, T. Metcalf, T. Herd, C. Anar, B. Rayner, J.C. Billker, O. Choudhary, J.S. (2019). Landscape of the Plasmodium Interactome Reveals Both Conserved and Species-Specific Functionality. Cell reports, Vol.28 (6), pp. 1635-1647.e5.

Liess, A.K. Kucerova, A. Schweimer, K. Yu, L. Roumeliotis, T.I. Diebold, M. Dybkov, O. Sotriffer, C. Urlaub, H. Choudhary, J.S. Mansfeld, J. Lorenz, S. (2019). Autoinhibition Mechanism of the Ubiquitin-Conjugating Enzyme UBE2S by Autoubiquitination. Structure, Vol.27 (8), pp. 1195-1210.e7.

Frankish, A. Diekhans, M. Ferreira, A.-. Johnson, R. Jungreis, I. Loveland, J. Mudge, J.M. Sisu, C. Wright, J. Armstrong, J. Barnes, I. Berry, A. Bignell, A. Carbonell Sala, S. Chrast, J. Cunningham, F. Di Domenico, T. Donaldson, S. Fiddes, I.T. García Girón, C. Gonzalez, J.M. Grego, T. Hardy, M. Hourlier, T. Hunt, T. Izuogu, O.G. Lagarde, J. Martin, F.J. Martínez, L. Mohanan, S. Muir, P. Navarro, F.C. Parker, A. Pei, B. Pozo, F. Ruffier, M. Schmitt, B.M. Stapleton, E. Suner, M.-. Sycheva, I. Uszczynska-Ratajczak, B. Xu, J. Yates, A. Zerbino, D. Zhang, Y. Aken, B. Choudhary, J.S. Gerstein, M. Guigó, R. Hubbard, T.J. Kellis, M. Paten, B. Reymond, A. Tress, M.L. Flicek, P. (2019). GENCODE reference annotation for the human and mouse genomes. Nucleic acids research, Vol.47 (D1), pp. D766-D773.

Capalbo, L. Bassi, Z.I. Geymonat, M. Todesca, S. Copoiu, L. Enright, A.J. Callaini, G. Riparbelli, M.G. Yu, L. Choudhary, J.S. Ferrero, E. Wheatley, S. Douglas, M.E. Mishima, M. D’Avino, P.P. (2019). The midbody interactome reveals unexpected roles for PP1 phosphatases in cytokinesis. Nature communications, Vol.10 (1).  show abstract

Dunstan, R.A. Pickard, D. Dougan, S. Goulding, D. Cormie, C. Hardy, J. Li, F. Grinter, R. Harcourt, K. Yu, L. Song, J. Schreiber, F. Choudhary, J. Clare, S. Coulibaly, F. Strugnell, R.A. Dougan, G. Lithgow, T. (2019). The flagellotropic bacteriophage YSD1 targets Salmonella Typhi with a Chi‐like protein tail fibre. Molecular microbiology, Vol.112 (6), pp. 1831-1846.

Bianco, J.N. Bergoglio, V. Lin, Y.-. Pillaire, M.-. Schmitz, A.-. Gilhodes, J. Lusque, A. Mazières, J. Lacroix-Triki, M. Roumeliotis, T.I. Choudhary, J. Moreaux, J. Hoffmann, J.-. Tourrière, H. Pasero, P. (2019). Overexpression of Claspin and Timeless protects cancer cells from replication stress in a checkpoint-independent manner. Nature communications, Vol.10 (1).

Mudge, J.M. Jungreis, I. Hunt, T. Gonzalez, J.M. Wright, J.C. Kay, M. Davidson, C. Fitzgerald, S. Seal, R. Tweedie, S. He, L. Waterhouse, R.M. Li, Y. Bruford, E. Choudhary, J.S. Frankish, A. Kellis, M. (2019). Discovery of high-confidence human protein-coding genes and exons by whole-genome PhyloCSF helps elucidate 118 GWAS loci. Genome research, Vol.29 (12), pp. 2073-2087.

Mayer, L. Jasztal, M. Pardo, M. Aguera de Haro, S. Collins, J. Bariana, T.K. Smethurst, P.A. Grassi, L. Petersen, R. Nurden, P. Favier, R. Yu, L. Meacham, S. Astle, W.J. Choudhary, J. Yue, W.W. Ouwehand, W.H. Guerrero, J.A. (2018). Nbeal2 interacts with Dock7, Sec16a, and Vac14. Blood, Vol.131 (9), pp. 1000-1011.  show abstract

Steinberg, J. Brooks, R.A. Southam, L. Bhatnagar, S. Roumeliotis, T.I. Hatzikotoulas, K. Zengini, E. Wilkinson, J.M. Choudhary, J.S. McCaskie, A.W. Zeggini, E. (2018). Widespread epigenomic, transcriptomic and proteomic differences between hip osteophytic and articular chondrocytes in osteoarthritis. Rheumatology (oxford), Vol.57 (8), pp. 1481-1489.  show abstract

Gozdecka, M. Meduri, E. Mazan, M. Tzelepis, K. Dudek, M. Knights, A.J. Pardo, M. Yu, L. Choudhary, J.S. Metzakopian, E. Iyer, V. Yun, H. Park, N. Varela, I. Bautista, R. Collord, G. Dovey, O. Garyfallos, D.A. De Braekeleer, E. Kondo, S. Cooper, J. Göttgens, B. Bullinger, L. Northcott, P.A. Adams, D. Vassiliou, G.S. Huntly, B.J. (2018). UTX-mediated enhancer and chromatin remodeling suppresses myeloid leukemogenesis through noncatalytic inverse regulation of ETS and GATA programs. Nature genetics, Vol.50 (6), pp. 883-894.

Barreiro-Alonso, A. Lamas-Maceiras, M. García-Díaz, R. Rodríguez-Belmonte, E. Yu, L. Pardo, M. Choudhary, J.S. Cerdán, M.E. (2018). Delineating the HMGB1 and HMGB2 interactome in prostate and ovary epithelial cells and its relationship with cancer. Oncotarget, Vol.9 (27), pp. 19050-19064.

Pollard, D.J. Berger, C.N. So, E.C. Yu, L. Hadavizadeh, K. Jennings, P. Tate, E.W. Choudhary, J.S. Frankel, G. (2018). Broad-Spectrum Regulation of Nonreceptor Tyrosine Kinases by the Bacterial ADP-Ribosyltransferase EspJ. Mbio, Vol.9 (2).  show abstract

Bakos, G. Yu, L. Gak, I.A. Roumeliotis, T.I. Liakopoulos, D. Choudhary, J.S. Mansfeld, J. (2018). An E2-ubiquitin thioester-driven approach to identify substrates modified with ubiquitin and ubiquitin-like molecules. Nature communications, Vol.9 (1).

Raouf, R. Lolignier, S. Sexton, J.E. Millet, Q. Santana-Varela, S. Biller, A. Fuller, A.M. Pereira, V. Choudhary, J.S. Collins, M.O. Moss, S.E. Lewis, R. Tordo, J. Henckaerts, E. Linden, M. Wood, J.N. (2018). Inhibition of somatosensory mechanotransduction by annexin A6. Sci signal, Vol.11 (535).  show abstract

Schlaffner, C.N. Pirklbauer, G.J. Bender, A. Steen, J.A. Choudhary, J.S. (2018). A Fast and Quantitative Method for Post-translational Modification and Variant Enabled Mapping of Peptides to Genomes. J vis exp, (135).  show abstract

Scanlan, E. Yu, L. Maskell, D. Choudhary, J. Grant, A. (2017). A quantitative proteomic screen of the Campylobacter jejuni flagellar-dependent secretome. Journal of proteomics, Vol.152, pp. 181-187.

Modrzynska, K. Pfander, C. Chappell, L. Yu, L. Suarez, C. Dundas, K. Gomes, A.R. Goulding, D. Rayner, J.C. Choudhary, J. Billker, O. (2017). A Knockout Screen of ApiAP2 Genes Reveals Networks of Interacting Transcriptional Regulators Controlling the Plasmodium Life Cycle. Cell host & microbe, Vol.21 (1), pp. 11-22.

Pardo, M. Bode, D. Yu, L. Choudhary, J.S. (2017). Resolving Affinity Purified Protein Complexes by Blue Native PAGE and Protein Correlation Profiling. J vis exp, (122).  show abstract

Jia, Y. Marq, J. Bisio, H. Jacot, D. Mueller, C. Yu, L. Choudhary, J. Brochet, M. Soldati‐Favre, D. (2017). Crosstalk between PKA and PKG controls pH ‐dependent host cell egress of Toxoplasma gondii. The embo journal, Vol.36 (21), pp. 3250-3267.

Thomas, D.C. Clare, S. Sowerby, J.M. Pardo, M. Juss, J.K. Goulding, D.A. van der Weyden, L. Storisteanu, D. Prakash, A. Espéli, M. Flint, S. Lee, J.C. Hoenderdos, K. Kane, L. Harcourt, K. Mukhopadhyay, S. Umrania, Y. Antrobus, R. Nathan, J.A. Adams, D.J. Bateman, A. Choudhary, J.S. Lyons, P.A. Condliffe, A.M. Chilvers, E.R. Dougan, G. Smith, K.G. (2017). Eros is a novel transmembrane protein that controls the phagocyte respiratory burst and is essential for innate immunity. Journal of experimental medicine, Vol.214 (4), pp. 1111-1128.  show abstract

Yeung, A.T. Hale, C. Lee, A.H. Gill, E.E. Bushell, W. Parry-Smith, D. Goulding, D. Pickard, D. Roumeliotis, T. Choudhary, J. Thomson, N. Skarnes, W.C. Dougan, G. Hancock, R.E. (2017). Exploiting induced pluripotent stem cell-derived macrophages to unravel host factors influencing Chlamydia trachomatis pathogenesis. Nature communications, Vol.8 (1).

Bayés, À. Collins, M.O. Reig-Viader, R. Gou, G. Goulding, D. Izquierdo, A. Choudhary, J.S. Emes, R.D. Grant, S.G. (2017). Evolution of complexity in the zebrafish synapse proteome. Nature communications, Vol.8 (1).

Weisser, H. Choudhary, J.S. (2017). Targeted Feature Detection for Data-Dependent Shotgun Proteomics. J proteome res, Vol.16 (8), pp. 2964-2974.  show abstract

Schlaffner, C.N. Pirklbauer, G.J. Bender, A. Choudhary, J.S. (2017). Fast, Quantitative and Variant Enabled Mapping of Peptides to Genomes. Cell systems, Vol.5 (2), pp. 152-156.e4.

Roumeliotis, T.I. Williams, S.P. Gonçalves, E. Alsinet, C. Del Castillo Velasco-Herrera, M. Aben, N. Ghavidel, F.Z. Michaut, M. Schubert, M. Price, S. Wright, J.C. Yu, L. Yang, M. Dienstmann, R. Guinney, J. Beltrao, P. Brazma, A. Pardo, M. Stegle, O. Adams, D.J. Wessels, L. Saez-Rodriguez, J. McDermott, U. Choudhary, J.S. (2017). Genomic Determinants of Protein Abundance Variation in Colorectal Cancer Cells. Cell reports, Vol.20 (9), pp. 2201-2214.

Gialitakis, M. Tolaini, M. Li, Y. Pardo, M. Yu, L. Toribio, A. Choudhary, J.S. Niakan, K. Papayannopoulos, V. Stockinger, B. (2017). Activation of the Aryl Hydrocarbon Receptor Interferes with Early Embryonic Development. Stem cell reports, .

Fernández, E. Collins, M.O. Frank, R.A. Zhu, F. Kopanitsa, M.V. Nithianantharajah, J. Lemprière, S.A. Fricker, D. Elsegood, K.A. McLaughlin, C.L. Croning, M.D. Mclean, C. Armstrong, J.D. Hill, W.D. Deary, I.J. Cencelli, G. Bagni, C. Fromer, M. Purcell, S.M. Pocklington, A.J. Choudhary, J.S. Komiyama, N.H. Grant, S.G. (2017). Arc Requires PSD95 for Assembly into Postsynaptic Complexes Involved with Neural Dysfunction and Intelligence. Cell reports, Vol.21 (3), pp. 679-691.

Berger, C.N. Crepin, V.F. Roumeliotis, T.I. Wright, J.C. Carson, D. Pevsner-Fischer, M. Furniss, R.C. Dougan, G. Dori-Bachash, M. Yu, L. Clements, A. Collins, J.W. Elinav, E. Larrouy-Maumus, G.J. Choudhary, J.S. Frankel, G. (2017). Citrobacter rodentium Subverts ATP Flux and Cholesterol Homeostasis in Intestinal Epithelial Cells In Vivo. Cell metabolism, Vol.26 (5), pp. 738-752.e6.

Invergo, B.M. Brochet, M. Yu, L. Choudhary, J. Beltrao, P. Billker, O. (2017). Sub-minute Phosphoregulation of Cell Cycle Systems during Plasmodium Gamete Formation. Cell reports, Vol.21 (7), pp. 2017-2029.

Collins, M.O. Woodley, K.T. Choudhary, J.S. (2017). Global, site-specific analysis of neuronal protein S-acylation. Scientific reports, Vol.7 (1).

Pardo, M. Yu, L. Shen, S. Tate, P. Bode, D. Letney, B.L. Quelle, D.E. Skarnes, W. Choudhary, J.S. (2017). Myst2/Kat7 histone acetyltransferase interaction proteomics reveals tumour-suppressor Niam as a novel binding partner in embryonic stem cells. Scientific reports, Vol.7 (1).

Steinberg, J. Ritchie, G.R. Roumeliotis, T.I. Jayasuriya, R.L. Clark, M.J. Brooks, R.A. Binch, A.L. Shah, K.M. Coyle, R. Pardo, M. Le Maitre, C.L. Ramos, Y.F. Nelissen, R.G. Meulenbelt, I. McCaskie, A.W. Choudhary, J.S. Wilkinson, J.M. Zeggini, E. (2017). Integrative epigenomics, transcriptomics and proteomics of patient chondrocytes reveal genes and pathways involved in osteoarthritis. Scientific reports, Vol.7 (1).

Maggiore, L. Yu, L. Omasits, U. Rossi, O. Dougan, G. Thomson, N.R. Saul, A. Choudhary, J.S. Gerke, C. (2016). Quantitative proteomic analysis of Shigella flexneri and Shigella sonnei Generalized Modules for Membrane Antigens (GMMA) reveals highly pure preparations. International journal of medical microbiology, Vol.306 (2), pp. 99-108.

Weisser, H. Wright, J.C. Mudge, J.M. Gutenbrunner, P. Choudhary, J.S. (2016). Flexible Data Analysis Pipeline for High-Confidence Proteogenomics. J proteome res, Vol.15 (12), pp. 4686-4695.  show abstract

Bode, D. Yu, L. Tate, P. Pardo, M. Choudhary, J. (2016). Characterization of Two Distinct Nucleosome Remodeling and Deacetylase (NuRD) Complex Assemblies in Embryonic Stem Cells. Molecular & cellular proteomics, Vol.15 (3), pp. 878-891.

Petryszak, R. Keays, M. Tang, Y.A. Fonseca, N.A. Barrera, E. Burdett, T. Füllgrabe, A. Fuentes, A.M. Jupp, S. Koskinen, S. Mannion, O. Huerta, L. Megy, K. Snow, C. Williams, E. Barzine, M. Hastings, E. Weisser, H. Wright, J. Jaiswal, P. Huber, W. Choudhary, J. Parkinson, H.E. Brazma, A. (2016). Expression Atlas update—an integrated database of gene and protein expression in humans, animals and plants. Nucleic acids research, Vol.44 (D1), pp. D746-D752.

Wright, J.C. Mudge, J. Weisser, H. Barzine, M.P. Gonzalez, J.M. Brazma, A. Choudhary, J.S. Harrow, J. (2016). Improving GENCODE reference gene annotation using a high-stringency proteogenomics workflow. Nature communications, Vol.7 (1).

Röst, H.L. Sachsenberg, T. Aiche, S. Bielow, C. Weisser, H. Aicheler, F. Andreotti, S. Ehrlich, H.-. Gutenbrunner, P. Kenar, E. Liang, X. Nahnsen, S. Nilse, L. Pfeuffer, J. Rosenberger, G. Rurik, M. Schmitt, U. Veit, J. Walzer, M. Wojnar, D. Wolski, W.E. Schilling, O. Choudhary, J.S. Malmström, L. Aebersold, R. Reinert, K. Kohlbacher, O. (2016). OpenMS: a flexible open-source software platform for mass spectrometry data analysis. Nature methods, Vol.13 (9), pp. 741-748.

Tay, C.L. Jones, M.L. Hodson, N. Theron, M. Choudhary, J.S. Rayner, J.C. (2016). Study of Plasmodium falciparum DHHC palmitoyl transferases identifies a role for PfDHHC9 in gametocytogenesis. Cellular microbiology, Vol.18 (11), pp. 1596-1610.

Blohmke, C.J. Darton, T.C. Jones, C. Suarez, N.M. Waddington, C.S. Angus, B. Zhou, L. Hill, J. Clare, S. Kane, L. Mukhopadhyay, S. Schreiber, F. Duque-Correa, M.A. Wright, J.C. Roumeliotis, T.I. Yu, L. Choudhary, J.S. Mejias, A. Ramilo, O. Shanyinde, M. Sztein, M.B. Kingsley, R.A. Lockhart, S. Levine, M.M. Lynn, D.J. Dougan, G. Pollard, A.J. (2016). Interferon-driven alterations of the host’s amino acid metabolism in the pathogenesis of typhoid fever. Journal of experimental medicine, Vol.213 (6), pp. 1061-1077.  show abstract

Hodson, N. Invergo, B. Rayner, J.C. Choudhary, J.S. (2015). Palmitoylation and palmitoyl-transferases in Plasmodium parasites. Biochemical society transactions, Vol.43 (2), pp. 240-245.  show abstract

Peltier, J. Shaw, H.A. Couchman, E.C. Dawson, L.F. Yu, L. Choudhary, J.S. Kaever, V. Wren, B.W. Fairweather, N.F. (2015). Cyclic diGMP Regulates Production of Sortase Substrates of Clostridium difficile and Their Surface Exposure through ZmpI Protease-mediated Cleavage. Journal of biological chemistry, Vol.290 (40), pp. 24453-24469.

Kunowska, N. Rotival, M. Yu, L. Choudhary, J. Dillon, N. (2015). Identification of protein complexes that bind to histone H3 combinatorial modifications using super-SILAC and weighted correlation network analysis. Nucleic acids research, Vol.43 (3), pp. 1418-1432.

Mehla, K. Magotra, A. Choudhary, J. Singh, A.K. Mohanty, A.K. Upadhyay, R.C. Srinivasan, S. Gupta, P. Choudhary, N. Antony, B. Khan, F. (2014). Genome-wide analysis of the heat stress response in Zebu (Sahiwal) cattle. Gene, Vol.533 (2), pp. 500-507.

Purcell, S.M. Moran, J.L. Fromer, M. Ruderfer, D. Solovieff, N. Roussos, P. O’Dushlaine, C. Chambert, K. Bergen, S.E. Kähler, A. Duncan, L. Stahl, E. Genovese, G. Fernández, E. Collins, M.O. Komiyama, N.H. Choudhary, J.S. Magnusson, P.K. Banks, E. Shakir, K. Garimella, K. Fennell, T. DePristo, M. Grant, S.G. Haggarty, S.J. Gabriel, S. Scolnick, E.M. Lander, E.S. Hultman, C.M. Sullivan, P.F. McCarroll, S.A. Sklar, P. (2014). A polygenic burden of rare disruptive mutations in schizophrenia. Nature, Vol.506 (7487), pp. 185-190.

Collins, M.O. Wright, J.C. Jones, M. Rayner, J.C. Choudhary, J.S. (2014). Confident and sensitive phosphoproteomics using combinations of collision induced dissociation and electron transfer dissociation. Journal of proteomics, Vol.103, pp. 1-14.

Wen, B. Li, G. Wright, J.C. Du, C. Feng, Q. Xu, X. Choudhary, J.S. Wang, J. (2014). The OMSSAPercolator: An automated tool to validate OMSSA results. Proteomics, Vol.14 (9), pp. 1011-1014.

Bayés, À. Collins, M.O. Galtrey, C.M. Simonnet, C. Roy, M. Croning, M.D. Gou, G. van de Lagemaat, L.N. Milward, D. Whittle, I.R. Smith, C. Choudhary, J.S. Grant, S.G. (2014). Human post-mortem synapse proteome integrity screening for proteomic studies of postsynaptic complexes. Molecular brain, Vol.7 (1).

Pettit, L.J. Browne, H.P. Yu, L. Smits, W. Fagan, R.P. Barquist, L. Martin, M.J. Goulding, D. Duncan, S.H. Flint, H.J. Dougan, G. Choudhary, J.S. Lawley, T.D. (2014). Functional genomics reveals that Clostridium difficile Spo0A coordinates sporulation, virulence and metabolism. Bmc genomics, Vol.15 (1), pp. 160-160.

McMahon, A.C. Barnett, M.W. O'Leary, T.S. Stoney, P.N. Collins, M.O. Papadia, S. Choudhary, J.S. Komiyama, N.H. Grant, S.G. Hardingham, G.E. Wyllie, D.J. Kind, P.C. (2012). SynGAP isoforms exert opposing effects on synaptic strength. Nature communications, Vol.3 (1).

Pardo, M. Choudhary, J.S. (2012). Assignment of Protein Interactions from Affinity Purification/Mass Spectrometry Data. Journal of proteome research, Vol.11 (3), pp. 1462-1474.

Kirov, G. Pocklington, A.J. Holmans, P. Ivanov, D. Ikeda, M. Ruderfer, D. Moran, J. Chambert, K. Toncheva, D. Georgieva, L. Grozeva, D. Fjodorova, M. Wollerton, R. Rees, E. Nikolov, I. van de Lagemaat, L.N. Bayés, À. Fernandez, E. Olason, P.I. Böttcher, Y. Komiyama, N.H. Collins, M.O. Choudhary, J. Stefansson, K. Stefansson, H. Grant, S.G. Purcell, S. Sklar, P. O'Donovan, M.C. Owen, M.J. (2012). De novo CNV analysis implicates specific abnormalities of postsynaptic signalling complexes in the pathogenesis of schizophrenia. Molecular psychiatry, Vol.17 (2), pp. 142-153.

Sebastian, S. Brochet, M. Collins, M.O. Schwach, F. Jones, M.L. Goulding, D. Rayner, J.C. Choudhary, J.S. Billker, O. (2012). A Plasmodium Calcium-Dependent Protein Kinase Controls Zygote Development and Transmission by Translationally Activating Repressed mRNAs. Cell host & microbe, Vol.12 (1), pp. 9-19.

Jones, M.L. Collins, M.O. Goulding, D. Choudhary, J.S. Rayner, J.C. (2012). Analysis of Protein Palmitoylation Reveals a Pervasive Role in Plasmodium Development and Pathogenesis. Cell host & microbe, Vol.12 (2), pp. 246-258.

Wright, J.C. Collins, M.O. Yu, L. Käll, L. Brosch, M. Choudhary, J.S. (2012). Enhanced Peptide Identification by Electron Transfer Dissociation Using an Improved Mascot Percolator*. Molecular & cellular proteomics, Vol.11 (8), pp. 478-491.

Wilson, C.H. Crombie, C. van der Weyden, L. Poulogiannis, G. Rust, A.G. Pardo, M. Gracia, T. Yu, L. Choudhary, J. Poulin, G.B. McIntyre, R.E. Winton, D.J. March, H.N. Arends, M.J. Fraser, A.G. Adams, D.J. (2012). Nuclear receptor binding protein 1 regulates intestinal progenitor cell homeostasis and tumour formation. The embo journal, Vol.31 (11), pp. 2486-2497.

Chaudhuri, R.R. Yu, L. Kanji, A. Perkins, T.T. Gardner, P.P. Choudhary, J. Maskell, D.J. Grant, A.J. (2011). Quantitative RNA-seq analysis of the Campylobacter jejuni transcriptome. Microbiology, Vol.157 (10), pp. 2922-2932.  show abstract

Brosch, M. Saunders, G.I. Frankish, A. Collins, M.O. Yu, L. Wright, J. Verstraten, R. Adams, D.J. Harrow, J. Choudhary, J.S. Hubbard, T. (2011). Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and "resurrected" pseudogenes in the mouse genome. Genome research, Vol.21 (5), pp. 756-767.

Bayés, À. van de Lagemaat, L.N. Collins, M.O. Croning, M.D. Whittle, I.R. Choudhary, J.S. Grant, S.G. (2011). Characterization of the proteome, diseases and evolution of the human postsynaptic density. Nature neuroscience, Vol.14 (1), pp. 19-21.

Pagliuca, F.W. Collins, M.O. Lichawska, A. Zegerman, P. Choudhary, J.S. Pines, J. (2011). Quantitative Proteomics Reveals the Basis for the Biochemical Specificity of the Cell-Cycle Machinery. Molecular cell, Vol.43 (3), pp. 406-417.

Mansfeld, J. Collin, P. Collins, M.O. Choudhary, J.S. Pines, J. (2011). APC15 drives the turnover of MCC-CDC20 to make the spindle assembly checkpoint responsive to kinetochore attachment. Nature cell biology, Vol.13 (10), pp. 1234-1243.

Pagliuca, F.W. Collins, M.O. Choudhary, J.S. (2011). Coordinating cell cycle progression via cyclin specificity. Cell cycle, Vol.10 (24), pp. 4195-4196.

Pickard, D. Toribio, A.L. Petty, N.K. van Tonder, A. Yu, L. Goulding, D. Barrell, B. Rance, R. Harris, D. Wetter, M. Wain, J. Choudhary, J. Thomson, N. Dougan, G. (2010). A Conserved Acetyl Esterase Domain Targets Diverse Bacteriophages to the Vi Capsular Receptor of Salmonella enterica Serovar Typhi. Journal of bacteriology, Vol.192 (21), pp. 5746-5754.  show abstract

Pardo, M. Lang, B. Yu, L. Prosser, H. Bradley, A. Babu, M.M. Choudhary, J. (2010). An Expanded Oct4 Interaction Network: Implications for Stem Cell Biology, Development, and Disease. Cell stem cell, Vol.6 (4), pp. 382-395.

Jones, M.L. Collins, M.O. Choudhary, J. Rayner, J.C. (2010). A comprehensive survey of protein palmitoylation in late blood-stage Plasmodium falciparum. Malaria journal, Vol.9 (S2).

Jones, M.L. Collins, M.O. Choudhary, J.S. Rayner, J.C. (2010). A comprehensive survey of protein palmitoylation in late blood-stage Plasmodium falciparum. Malaria journal, Vol.9 (S2).

Tee, W.-. Pardo, M. Theunissen, T.W. Yu, L. Choudhary, J.S. Hajkova, P. Surani, M.A. (2010). Prmt5 is essential for early mouse development and acts in the cytoplasm to maintain ES cell pluripotency. Genes & development, Vol.24 (24), pp. 2772-2777.

Sharma, J. (2010). Structural characterisation of photosystem II. , .

Brosch, M. Choudhary, J. (2010). Scoring and Validation of Tandem MS Peptide Identification Methods. , , pp. 43-53.

Lawley, T.D. Croucher, N.J. Yu, L. Clare, S. Sebaihia, M. Goulding, D. Pickard, D.J. Parkhill, J. Choudhary, J. Dougan, G. (2009). Proteomic and Genomic Characterization of Highly Infectious Clostridium difficile 630 Spores. Journal of bacteriology, Vol.191 (17), pp. 5377-5386.  show abstract

Fernández, E. Collins, M.O. Uren, R.T. Kopanitsa, M.V. Komiyama, N.H. Croning, M.D. Zografos, L. Armstrong, J.D. Choudhary, J.S. Grant, S.G. (2009). Targeted tandem affinity purification of PSD‐95 recovers core postsynaptic complexes and schizophrenia susceptibility proteins. Molecular systems biology, Vol.5 (1), pp. 269-269.

Brosch, M. Yu, L. Hubbard, T. Choudhary, J. (2009). Accurate and Sensitive Peptide Identification with Mascot Percolator. Journal of proteome research, Vol.8 (6), pp. 3176-3181.

Coba, M.P. Pocklington, A.J. Collins, M.O. Kopanitsa, M.V. Uren, R.T. Swamy, S. Croning, M.D. Choudhary, J.S. Grant, S.G. (2009). Neurotransmitters Drive Combinatorial Multistate Postsynaptic Density Networks. Science signaling, Vol.2 (68), pp. ra19-ra19.

Pickard, D. Thomson, N.R. Baker, S. Wain, J. Pardo, M. Goulding, D. Hamlin, N. Choudhary, J. Threfall, J. Dougan, G. (2008). Molecular Characterization of the Salmonella enterica Serovar Typhi Vi-Typing Bacteriophage E1. Journal of bacteriology, Vol.190 (7), pp. 2580-2587.  show abstract

Brosch, M. Swamy, S. Hubbard, T. Choudhary, J. (2008). Comparison of Mascot and X!Tandem Performance for Low and High Accuracy Mass Spectrometry and the Development of an Adjusted Mascot Threshold. Molecular & cellular proteomics, Vol.7 (5), pp. 962-970.

Collins, M.O. Yu, L. Campuzano, I. Grant, S.G. Choudhary, J.S. (2008). Phosphoproteomic Analysis of the Mouse Brain Cytosol Reveals a Predominance of Protein Phosphorylation in Regions of Intrinsic Sequence Disorder. Molecular & cellular proteomics, Vol.7 (7), pp. 1331-1348.

Emes, R.D. Pocklington, A.J. Anderson, C.N. Bayes, A. Collins, M.O. Vickers, C.A. Croning, M.D. Malik, B.R. Choudhary, J.S. Armstrong, J.D. Grant, S.G. (2008). Evolutionary expansion and anatomical specialization of synapse proteome complexity. Nature neuroscience, Vol.11 (7), pp. 799-806.

Collins, M.O. Choudhary, J.S. (2008). Mapping multiprotein complexes by affinity purification and mass spectrometry. Current opinion in biotechnology, Vol.19 (4), pp. 324-330.

Collins, M.O. Yu, L. Choudhary, J.S. (2007). Analysis of protein phosphorylation on a proteome-scale. Proteomics, Vol.7 (16), pp. 2751-2768.

Collins, M.O. Husi, H. Yu, L. Brandon, J.M. Anderson, C.N. Blackstock, W.P. Choudhary, J.S. Grant, S.G. (2006). Molecular characterization and comparison of the components and multiprotein complexes in the postsynaptic proteome. Journal of neurochemistry, Vol.97, pp. 16-23.

Collins, M.O. Yu, L. Coba, M.P. Husi, H. Campuzano, I. Blackstock, W.P. Choudhary, J.S. Grant, S.G. (2005). Proteomic Analysis of in Vivo Phosphorylated Synaptic Proteins. Journal of biological chemistry, Vol.280 (7), pp. 5972-5982.

Collins, M.O. Yu, L. Husi, H. Blackstock, W.P. Choudhary, J.S. Grant, S.G. (2005). Robust Enrichment of Phosphorylated Species in Complex Mixtures by Sequential Protein and Peptide Metal-Affinity Chromatography and Analysis by Tandem Mass Spectrometry. Science signaling, Vol.2005 (298), pp. pl6-pl6.

Choudhary, J. Grant, S.G. (2004). Proteomics in postgenomic neuroscience: the end of the beginning. Nature neuroscience, Vol.7 (5), pp. 440-445.

Gan, J.-. Yu, L. Wu, J. Xu, H. Choudhary, J.S. Blackstock, W.P. Liu, W.-. Xia, Z.-. (2004). The Three-Dimensional Structure and X-Ray Sequence Reveal that Trichomaglin Is a Novel S-like Ribonuclease. Structure, Vol.12 (6), pp. 1015-1025.

Woods, A.J. Roberts, M.S. Choudhary, J. Barry, S.T. Mazaki, Y. Sabe, H. Morley, S.J. Critchley, D.R. Norman, J.C. (2002). Paxillin Associates with Poly(A)-binding Protein 1 at the Dense Endoplasmic Reticulum and the Leading Edge of Migrating Cells. Journal of biological chemistry, Vol.277 (8), pp. 6428-6437.

Bell, A.W. Ward, M.A. Blackstock, W.P. Freeman, H.N. Choudhary, J.S. Lewis, A.P. Chotai, D. Fazel, A. Gushue, J.N. Paiement, J. Palcy, S. Chevet, E. Lafrenière-Roula, M. Solari, R. Thomas, D.Y. Rowley, A. Bergeron, J.J. (2001). Proteomics Characterization of Abundant Golgi Membrane Proteins. Journal of biological chemistry, Vol.276 (7), pp. 5152-5165.

Choudhary, J.S. Blackstock, W.P. Creasy, D.M. Cottrell, J.S. (2001). Interrogating the human genome using uninterpreted mass spectrometry data. Proteomics, Vol.1 (5), pp. 651-667.

Choudhary, J.S. Blackstock, W.P. Creasy, D.M. Cottrell, J.S. (2001). Interrogating the human genome using uninterpreted mass spectrometry data. Proteomics, Vol.1 (5), pp. 651-667.

Choudhary, J.S. Blackstock, W.P. Creasy, D.M. Cottrell, J.S. (2001). Matching peptide mass spectra to EST and genomic DNA databases. Trends in biotechnology, Vol.19 (10), pp. S17-S22.

Rowley, A. Choudhary, J.S. Marzioch, M. Ward, M.A. Weir, M. Solari, R.C. Blackstock, W.P. (2000). Applications of Protein Mass Spectrometry in Cell Biology. Methods, Vol.20 (4), pp. 383-397.

Husi, H. Ward, M.A. Choudhary, J.S. Blackstock, W.P. Grant, S.G. (2000). Proteomic analysis of NMDA receptor–adhesion protein signaling complexes. Nature neuroscience, Vol.3 (7), pp. 661-669.

Zheleva, D. Sharma, J. Panico, M. Morris, H.R. Barber, J. (1998). Isolation and Characterization of Monomeric and Dimeric CP47-Reaction Center Photosystem II Complexes. Journal of biological chemistry, Vol.273 (26), pp. 16122-16127.

Sharma, J. Panico, M. Barber, J. Morris, H.R. (1997). Characterization of the Low Molecular Weight Photosystem II Reaction Center Subunits and Their Light-induced Modifications by Mass Spectrometry. Journal of biological chemistry, Vol.272 (7), pp. 3935-3943.

Sharma, J. Panico, M. Shipton, C.A. Nilsson, F. Morris, H.R. Barber, J. (1997). Primary Structure Characterization of the Photosystem II D1 and D2 Subunits. Journal of biological chemistry, Vol.272 (52), pp. 33158-33166.

Sharma, J. Panico, M. Barber, J. Morris, H.R. (1997). Purification and Determination of Intact Molecular Mass by Electrospray Ionization Mass Spectrometry of the Photosystem II Reaction Center Subunits. Journal of biological chemistry, Vol.272 (52), pp. 33153-33157.

Abdi, A. Yu, L. Goulding, D. Rono, M.K. Bejon, P. Choudhary, J. Rayner, J. Proteomic analysis of extracellular vesicles from a Plasmodium falciparum Kenyan clinical isolate defines a core parasite secretome. Wellcome open research, Vol.2, pp. 50-50.  show abstract

Berger, C.N. Crepin, V.F. Roumeliotis, T.I. Wright, J.C. Serafini, N. Pevsner-Fischer, M. Yu, L. Elinav, E. Di Santo, J.P. Choudhary, J.S. Frankel, G. The Citrobacter rodentium type III secretion system effector EspO affects mucosal damage repair and antimicrobial responses. Plos pathogens, Vol.14 (10), pp. e1007406-e1007406.

Fang, H. Klages, N. Baechler, B. Hillner, E. Yu, L. Pardo, M. Choudhary, J. Brochet, M. Multiple short windows of calcium-dependent protein kinase 4 activity coordinate distinct cell cycle events during Plasmodium gametogenesis. Elife, Vol.6.  show abstract

Wright, J.C. Choudhary, J.S. DecoyPyrat: Fast Non-redundant Hybrid Decoy Sequence Generation for Large Scale Proteomics. Journal of proteomics & bioinformatics, Vol.09 (06).

Oshota, O. Conway, M. Fookes, M. Schreiber, F. Chaudhuri, R.R. Yu, L. Morgan, F.J. Clare, S. Choudhary, J. Thomson, N.R. Lio, P. Maskell, D.J. Mastroeni, P. Grant, A.J. Transcriptome and proteome analysis of Salmonella enterica serovar Typhimurium systemic infection of wild type and immune-deficient mice. Plos one, Vol.12 (8), pp. e0181365-e0181365.

Bayés, À. Collins, M.O. Croning, M.D. van de Lagemaat, L.N. Choudhary, J.S. Grant, S.G. Comparative Study of Human and Mouse Postsynaptic Proteomes Finds High Compositional Conservation and Abundance Differences for Key Synaptic Proteins. Plos one, Vol.7 (10), pp. e46683-e46683.

Mousnier, A. Schroeder, G.N. Stoneham, C.A. So, E.C. Garnett, J.A. Yu, L. Matthews, S.J. Choudhary, J.S. Hartland, E.L. Frankel, G. A New Method To Determine In Vivo Interactomes Reveals Binding of the Legionella pneumophila Effector PieE to Multiple Rab GTPases. Mbio, Vol.5 (4).  show abstract

Perkins, T.T. Kingsley, R.A. Fookes, M.C. Gardner, P.P. James, K.D. Yu, L. Assefa, S.A. He, M. Croucher, N.J. Pickard, D.J. Maskell, D.J. Parkhill, J. Choudhary, J. Thomson, N.R. Dougan, G. A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus Salmonella Typhi. Plos genetics, Vol.5 (7), pp. e1000569-e1000569.

Brochet, M. Collins, M.O. Smith, T.K. Thompson, E. Sebastian, S. Volkmann, K. Schwach, F. Chappell, L. Gomes, A.R. Berriman, M. Rayner, J.C. Baker, D.A. Choudhary, J. Billker, O. Phosphoinositide Metabolism Links cGMP-Dependent Protein Kinase G to Essential Ca2+ Signals at Key Decision Points in the Life Cycle of Malaria Parasites. Plos biology, Vol.12 (3), pp. e1001806-e1001806.

Petty, N.K. Feltwell, T. Pickard, D. Clare, S. Toribio, A.L. Fookes, M. Roberts, K. Monson, R. Nair, S. Kingsley, R.A. Bulgin, R. Wiles, S. Goulding, D. Keane, T. Corton, C. Lennard, N. Harris, D. Willey, D. Rance, R. Yu, L. Choudhary, J.S. Churcher, C. Quail, M.A. Parkhill, J. Frankel, G. Dougan, G. Salmond, G.P. Thomson, N.R. Citrobacter rodentium is an Unstable Pathogen Showing Evidence of Significant Genomic Flux. Plos pathogens, Vol.7 (4), pp. e1002018-e1002018.

Steinberg, J. Ritchie, G.R. Roumeliotis, T.I. Jayasuriya, R.L. Brooks, R.A. Binch, A.L. Shah, K.M. Coyle, R. Pardo, M. Le Maitre, C.L. Ramos, Y.F. Nelissen, R.G. Meulenbelt, I. McCaskie, A.W. Choudhary, J.S. Mark Wilkinson, J. Zeggini, E. Integrative epigenomics, transcriptomics and proteomics of patient chondrocytes reveal genes and pathways involved in osteoarthritis. , .  show abstract

Shariff, M. Choudhary, J. Zahoor, S. Deb, M. Characterization of Streptococcus pneumoniae isolates from India with special reference to their sequence types. The journal of infection in developing countries, Vol.7 (02), pp. 101-109.  show abstract

Barzine, M. Freivalds, K. Wright, J.C. Opmanis, M. Rituma, D. Ghavidel, F.Z. Jarnuczak, A.J. Celms, E. Cerans, K. Jonassen, I. Lace, L. Vizcaíno, J.A. Choudhary, J. Brazma, A. Viksna, J. Using Deep Learning to Extrapolate Protein Expression Measurements. Proteomics, , pp. e2000009-e2000009.  show abstract

Lowe, M.E. Andersen, D.K. Caprioli, R.M. Choudhary, J. Cruz-Monserrate, Z. Dasyam, A.K. Forsmark, C.E. Gorelick, F.S. Gray, J.W. Haupt, M. Kelly, K.A. Olive, K.P. Plevritis, S.K. Rappaport, N. Roth, H.R. Steen, H. Swamidass, S.J. Tirkes, T. Uc, A. Veselkov, K. Whitcomb, D.C. Habtezion, A. Precision Medicine in Pancreatic Disease-Knowledge Gaps and Research Opportunities: Summary of a National Institute of Diabetes and Digestive and Kidney Diseases Workshop. Pancreas, Vol.48 (10), pp. 1250-1258.  show abstract

Abdi, A. Yu, L. Goulding, D. Rono, M.K. Bejon, P. Choudhary, J. Rayner, J. Proteomic analysis of extracellular vesicles from a Plasmodium falciparum Kenyan clinical isolate defines a core parasite secretome. Wellcome open research, Vol.2, pp. 50-50.  show abstract

More, K.R. Kaur, I. Giai Gianetto, Q. Invergo, B.M. Chaze, T. Jain, R. Huon, C. Gutenbrunner, P. Weisser, H. Matondo, M. Choudhary, J.S. Langsley, G. Singh, S. Chitnis, C.E. Phosphorylation-Dependent Assembly of a 14-3-3 Mediated Signaling Complex during Red Blood Cell Invasion by Plasmodium falciparum Merozoites. Mbio, Vol.11 (4).  show abstract

van Strien, J. Haupt, A. Schulte, U. Braun, H.-. Cabrera-Orefice, A. Choudhary, J.S. Evers, F. Fernandez-Vizarra, E. Guerrero-Castillo, S. Kooij, T.W. Páleníková, P. Pardo, M. Ugalde, C. Wittig, I. Wöhlbrand, L. Brandt, U. Arnold, S. Huynen, M.A. CEDAR, an online resource for the reporting and exploration of complexome profiling data. , .  show abstract

Zhong, Q. Roumeliotis, T.I. Kozik, Z. Cepeda-Molero, M. Fernández, L.Á. Shenoy, A.R. Bakal, C. Frankel, G. Choudhary, J.S. Clustering of Tir during enteropathogenic E coli infection triggers calcium influx–dependent pyroptosis in intestinal epithelial cells. Plos biology, Vol.18 (12), pp. e3000986-e3000986.  show abstract

Book Chapters

Wright, J.C. Choudhary, J.S. Chapter 4 PSM Scoring and Validation. Proteome Informatics. (pp. 69-92). Royal Society of Chemistry, ISBN: 9781782624288.


Thomas, D.C.Clare, S.Sowerby, J.M.Pardo, M.Juss, J.K.Goulding, D.A.Van der Weyden, L.Storisteanu, D.M.Prakash, A.Espeli, M.Flint, S.Lee, J.C.Hoenderdos, K.Kane, L.Harcourt, K.Mukhopadhyay, S.Umrania, Y.Antrobus, R.Adams, D.Bateman, A.Choudhary, J.S.Lyons, P.A.Condliffe, A.M.Chilvers, E.R.Dougan, G.Smith, K.G. (2016). Role of Eros, a novel transmembrane protein, in regulation of host defence, LANCET, Vol.387, p.12.

Collins, M.Choudhary, J. (2014). Resolving Sites of Protein Palmitoylation Using Quantitative Proteomics, MOLECULAR & CELLULAR PROTEOMICS, Vol.13 (8), p.S41.

Mansfeld, J.Collin, P.Collins, M.O.Choudhary, J.S.Pines, J. (2012). APC15 drives the turnover of MCC-Cdc20 to make the spindle assembly checkpoint responsive to kinetochore attachment, FEBS JOURNAL, Vol.279, p.556.

Hopf, C.Angrand, P.-.Gagneur, J.Heffernan, B.Mangano, R.Pickard, L.Ruffner, H.O'Sullivan, E.Stein, M.Thomas, S.Volkel, P.Kuster, B.Choudhary, J.Rowley, A.Drewes, G. (2004). O2-03-05 Proteomic analysis of amyloid precursor protein processing complexes in human neuroblastoma cells by tandem affinity purification, Neurobiology of Aging, Vol.25, p.S37.

Choudhary, J.S.Husi, H.Rowley, A.Yu, L.Ma, A.Grant, S.G. (2002). A functional proteomics analysis of the NMDA receptor., FASEB JOURNAL, Vol.16 (4), p.A522.

Rowley, A.Ward, M.A.Choudhary, J.J.Bell, A.Bergeron, J.J.Blackstock, W.P. (2000). Identification of Golgi membrane proteins by proteomics, MOLECULAR BIOLOGY OF THE CELL, Vol.11, pp.134A-135A.